SaffronTree.py 文件源码

def __init__(self,options):
        self.start_time = int(time.time())
        self.logger = logging.getLogger(__name__)
        self.output_directory           = options.output_directory 
        self.verbose                    = options.verbose
        self.threads                    = options.threads
        self.kmer                       = options.kmer
        self.min_kmers_threshold        = options.min_kmers_threshold
        self.max_kmers_threshold        = options.max_kmers_threshold
        self.input_files                = options.input_files
        self.keep_files                 = options.keep_files
        self.object_to_be_cleaned       = []

        if self.verbose:
            self.logger.setLevel(logging.DEBUG)
        else:
            self.logger.setLevel(logging.ERROR)
        self.kmc_major_version = KmcVersionDetect(self.verbose).major_version()