def getArrayRegion(self, arr, img=None, axes=(0, 1), **kwds):
"""
Return the result of ROI.getArrayRegion() masked by the elliptical shape
of the ROI. Regions outside the ellipse are set to 0.
"""
# Note: we could use the same method as used by PolyLineROI, but this
# implementation produces a nicer mask.
arr = ROI.getArrayRegion(self, arr, img, axes, **kwds)
if arr is None or arr.shape[axes[0]] == 0 or arr.shape[axes[1]] == 0:
return arr
w = arr.shape[axes[0]]
h = arr.shape[axes[1]]
## generate an ellipsoidal mask
mask = np.fromfunction(lambda x,y: (((x+0.5)/(w/2.)-1)**2+ ((y+0.5)/(h/2.)-1)**2)**0.5 < 1, (w, h))
# reshape to match array axes
if axes[0] > axes[1]:
mask = mask.T
shape = [(n if i in axes else 1) for i,n in enumerate(arr.shape)]
mask = mask.reshape(shape)
return arr * mask
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