postprocess.py 文件源码

python
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项目:picasso 作者: jungmannlab 项目源码 文件源码
def groupprops(locs, callback=None):
    try:
        locs = locs[locs.dark != -1]
    except AttributeError:
        pass
    group_ids = _np.unique(locs.group)
    n = len(group_ids)
    n_cols = len(locs.dtype)
    names = ['group', 'n_events'] + list(_itertools.chain(*[(_ + '_mean', _ + '_std') for _ in locs.dtype.names]))
    formats = ['i4', 'i4'] + 2 * n_cols * ['f4']
    groups = _np.recarray(n, formats=formats, names=names)
    if callback is not None:
        callback(0)
    for i, group_id in enumerate(_tqdm(group_ids, desc='Calculating group statistics', unit='Groups')):
        group_locs = locs[locs.group == group_id]
        groups['group'][i] = group_id
        groups['n_events'][i] = len(group_locs)
        for name in locs.dtype.names:
            groups[name + '_mean'][i] = _np.mean(group_locs[name])
            groups[name + '_std'][i] = _np.std(group_locs[name])
        if callback is not None:
            callback(i+1)
    return groups
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