report.py 文件源码

def store_reference_metadata(self, reference_path, ref_type, metric_prefix):
        """ ref_type - string e.g., 'Transcriptome'
            metric_prefix - string e.g., 'vdj' """

        if self.metadata is None:
            self.metadata = {}

        ref_metadata = cr_utils._load_reference_metadata_file(reference_path)

        for key in cr_constants.REFERENCE_METADATA_KEYS:
            value = ref_metadata.get(key, '')
            if value is None:
                value = ''

            # Backward compatibility with old reference metadata jsons that don't contain the type field
            if key == cr_constants.REFERENCE_TYPE_KEY and value == '':
                self.metadata['%s%s' % (metric_prefix, cr_constants.REFERENCE_TYPE_KEY)] = ref_type
                continue

            if np.isscalar(value):
                self.metadata['%s%s' % (metric_prefix, key)] = value
            elif key == cr_constants.REFERENCE_GENOMES_KEY:
                # Special case for genome key
                self.metadata['%s%s' % (metric_prefix, key)] = cr_reference.get_ref_name_from_genomes(value)
            else:
                self.metadata['%s%s' % (metric_prefix, key)] = ', '.join(str(x) for x in value)