TDM_NUPACK_tests.py 文件源码

def test_NUPACKSSScore(self, tmpdir=tmpdir):
        strand = 'r1-d'
        t_regi = self.h_inputs[3][strand]
        true_sstu = 0.9028 #0.9059
        true_sstu_sum = 9.5695 # 9.5847
        true_ssu = 0.8524 # 0.8579
        true_ssu_sum = 42.0609 # 42.1328
        trues = [true_ssu, true_ssu_sum,
                 true_sstu, true_sstu_sum, 44]
        score_names = ["min_Unpaired", "sum_Unpaired", "min_Unpaired_toe", \
                       "sum_Unpaired_toe", "seq_len"]
        out = tdm.NUPACKSSScore(strand,
                                self.sequence_dicts[0],
                                toe_region=t_regi,
                                clean=clean,
                                tmpdir=tmpdir)
        for i in range(4):
            self.assertTrue(np.isclose(out[i], trues[i]),
                            msg="Score {} Test:{} True:{}".format(score_names[i], out[i], trues[i]))