TDM_NUPACK_tests.py 文件源码

def test_NUPACKIntScore(self, tmpdir=tmpdir):
        seq_names  = ['hairpin1', 'hairpin2']
        seq_values = ["TTTTTTTTTTCCCAAAAAAAAAA",
                      "AAAAAAAAAAGGGTTTTTTTTTT"]

        seq_dict = dict(zip(seq_names, seq_values))

        true_score = 100 * sum([7.289922e-13, 1.146297e-14, 1.156180e-12]) / 2e-6
        out = tdm.NUPACKIntScore(
                           seq_names[0],
                           seq_names[1],
                           seq_dict,
                           clean=clean,
                           quiet=True,
                           tmpdir=tmpdir
                          )
        self.assertTrue(np.isclose(out, true_score, rtol=1e-6),
                         msg="true:{}\ntest:{}\n".format(true_score, out))