common.py 文件源码

def plot_tsne_totalcounts(chart, sample_properties, sample_data):
    """ Plot cells colored by total counts """
    analysis = sample_data.analysis
    if not analysis or len(sample_properties['genomes']) > 1:
        return None

    reads_per_bc = analysis.matrix.get_reads_per_bc()
    vmin, vmax = np.percentile(reads_per_bc, ws_gex_constants.TSNE_TOTALCOUNTS_PRCT_CLIP)

    return plot_dimensions_color(chart, analysis.get_tsne().transformed_tsne_matrix,
                                 reads_per_bc,
                                 ws_gex_constants.TSNE_TOTALCOUNTS_DESCRIPTION,
                                 vmin, vmax,
                                 1, 2)