SparseAPCluster.py 文件源码

python
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项目:pysapc 作者: bioinfocao 项目源码 文件源码
def getPreferenceList(preference,nSamplesOri,data_array):
    """
    Input preference should be a numeric scalar, or a string of 'min' / 'median', or a list/np 1D array(length of samples).
    Return preference list(same length as samples)
    """
    # numeric value
    if isinstance(preference, float) or isinstance(preference, int) or isinstance(preference, long):
        preference_list=[float(preference)]*nSamplesOri
    # str/unicode min/mean
    elif isinstance(preference, basestring):
        if str(preference)=='min':
            preference=data_array.min()
        elif str(preference)=='median':
            preference=np.median(data_array)
        else: #other string
            raise ValueError("Preference should be a numeric scalar, or a string of 'min' / 'median',\
            or a list/np 1D array(length of samples).\n Your input preference is: {0})".format(str(prefernce)))
        preference_list=[preference]*nSamplesOri
    # list or numpy array
    elif (isinstance(preference, list) or isinstance(preference, np.ndarray)) and len(preference)==nSamplesOri: 
        preference_list=preference
    else:
        raise ValueError("Preference should be a numeric scalar, or a str of 'min' / 'median',\
        or a list/np 1D array(length of samples).\n Your input preference is: {0})".format(str(prefernce)))
    return preference_list
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