__init__.py 文件源码

def main(args, outs):
    genomes = cr_matrix.GeneBCMatrices.load_genomes_from_h5(args.filtered_matrices)
    chemistry = cr_matrix.GeneBCMatrices.load_chemistry_from_h5(args.filtered_matrices)
    total_cells = cr_matrix.GeneBCMatrices.count_cells_from_h5(args.filtered_matrices)
    summary = {'chemistry_description': chemistry, 'filtered_bcs_transcriptome_union': total_cells}
    with open(outs.summary, 'w') as f:
        json.dump(summary, f, indent=4, sort_keys=True)

    sample_properties = cr_webshim.get_sample_properties(args.analysis_id, args.analysis_desc, genomes, version=martian.get_pipelines_version())

    sample_data_paths = cr_webshim_data.SampleDataPaths(
        summary_path=outs.summary,
        analysis_path=args.analysis,
    )

    sample_data = cr_webshim.load_sample_data(sample_properties, sample_data_paths)
    cr_webshim.build_web_summary_html(outs.web_summary, sample_properties, sample_data, PIPELINE_REANALYZE)