entrez_qiime.py 文件源码

def get_merged_nodes():

    merged = {}

    mergeddmp = open(args.infile_mergeddmp_path,'r')

    for curr_line in mergeddmp:
        curr_line_old_taxid = curr_line.split('|')[0].strip()
        curr_line_new_taxid = curr_line.split('|')[1].strip()
        merged[curr_line_old_taxid] = curr_line_new_taxid

    mergeddmp.close()

    log_file = open(args.logfile_path, 'a')
    log_file.write('get_merged_nodes() finished ' + strftime("%H:%M:%S on %d-%m-%Y",localtime()) + '\n')
    log_file.close()

    return(merged)

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