wrappers.py 文件源码

python
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项目:gloTK 作者: conchoecia 项目源码 文件源码
def run(self):
        """
        Call this function at the end of your class's `__init__` function.
        """
        stderr = os.path.abspath(os.path.join(self.outdir, self.name + '.log'))

        if self.pipe:
            self.args += ('|', self.pipe, '2>>'+stderr)

        if self.gzip:
            self.args += ('|', 'gzip', '1>', self.gzip)
        else:
            self.args.append('2>>'+stderr)
            self.args.append('1>>'+stderr)

        # Print timestamp to log

        log = open(stderr, 'a')
        log.write("[gloTK] timestamp={}\n".format(utils.timestamp()))

        cmd = ' '.join(map(str, self.args))
        print(cmd)
        log.write(cmd)

        start = time.time()
        save_cwd = os.getcwd()
        try:
            utils.safe_mkdir(self.outdir)
            os.chdir(self.outdir)
            spawn_pid = os.spawnle(os.P_NOWAIT, self.shell, self.shell, '-c', cmd, self.env)
            wait_pid, retcode, rusage = os.wait4(spawn_pid, 0)
            if wait_pid != spawn_pid:
                utils.die("could not wait for process %d: got %d" % (spawn_pid, wait_pid))
            os.chdir(save_cwd)
        except OSError as e:
            utils.info(e)
            utils.die("could not run wrapper for command:\n%s" % cmd)

        elapsed = time.time() - start
        retcode = os.WEXITSTATUS(retcode)

        if (self.return_ok is not None) and (self.return_ok != retcode):
            # Give some context to the non-zero return.
            if os.path.isfile(stderr):
                subprocess.call(['tail', '-3', stderr])
            utils.die("non-zero return (%d) from command:\n%s" % (retcode, cmd))
        log.close()
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