GffManagerTest.java 文件源码

@Test
@Transactional(propagation = Propagation.REQUIRES_NEW, rollbackFor = Exception.class)
public void testRegisterGffFail() throws IOException, FeatureIndexException, InterruptedException,
        NoSuchAlgorithmException {
    Resource resource = context.getResource("classpath:templates/Felis_catus.Felis_catus_6.2.81.gtf");

    FeatureIndexedFileRegistrationRequest request = new FeatureIndexedFileRegistrationRequest();
    request.setReferenceId(referenceId);
    request.setPath(resource.getFile().getAbsolutePath());

    boolean failed = true;
    try {
        gffManager.registerGeneFile(request);
    } catch (TribbleException.MalformedFeatureFile e) {
        failed = false;
    }

    Assert.assertFalse("Not failed on unsorted file", failed);

    /*Resource fakeIndex = context.getResource("classpath:templates/fake_gtf_index.tbi");
    request.setIndexPath(fakeIndex.getFile().getAbsolutePath());

    failed = true;
    try {
        gffManager.registerGeneFile(request);
    } catch (Exception e) {
        failed = false;
    }

    Assert.assertFalse("Not failed on unsorted file", failed);*/
}