NanoStat.py 文件源码

def main():
    args = get_args()
    if not os.path.exists(args.outdir):
        os.makedirs(args.outdir)
    sources = [args.fastq, args.bam, args.summary]
    sourcename = ["fastq", "bam", "summary"]
    datadf = nanoget.get_input(
        source=[n for n, s in zip(sourcename, sources) if s][0],
        files=[f for f in sources if f][0],
        threads=args.threads,
        readtype=args.readtype,
        combine="track")
    if args.name:
        output = args.name
    else:
        output = os.path.join(args.outdir, args.prefix + "NanoStats.txt")
    write_stats([datadf], output)